# Doxygen configuration for PEM (Fortran-focused baseline)

DOXYFILE_ENCODING      = UTF-8
PROJECT_NAME           = "PEM (Planetary Evolution Model)"
PROJECT_BRIEF          = "Generated source documentation for PEM Fortran modules"
PROJECT_NUMBER         = dev
PROJECT_LOGO           = doc/theme/pem-logo.png
OUTPUT_DIRECTORY       = doc/doxygen
CREATE_SUBDIRS         = NO
ALLOW_UNICODE_NAMES    = NO
OUTPUT_LANGUAGE        = English

BRIEF_MEMBER_DESC      = YES
REPEAT_BRIEF           = YES
ALWAYS_DETAILED_SEC    = NO
INLINE_INHERITED_MEMB  = NO
FULL_PATH_NAMES        = NO
STRIP_FROM_PATH        =
SHORT_NAMES            = NO
JAVADOC_AUTOBRIEF      = NO
MULTILINE_CPP_IS_BRIEF = NO
PYTHON_DOCSTRING       = YES
INHERIT_DOCS           = YES
SEPARATE_MEMBER_PAGES  = NO

OPTIMIZE_OUTPUT_FOR_C  = NO
OPTIMIZE_OUTPUT_JAVA   = NO
OPTIMIZE_FOR_FORTRAN   = YES
OPTIMIZE_OUTPUT_VHDL   = NO
OPTIMIZE_OUTPUT_SLICE  = NO

MARKDOWN_SUPPORT       = YES
AUTOLINK_SUPPORT       = YES
BUILTIN_STL_SUPPORT    = NO
CPP_CLI_SUPPORT        = NO
SIP_SUPPORT            = NO
IDL_PROPERTY_SUPPORT   = YES
DISTRIBUTE_GROUP_DOC   = NO
GROUP_NESTED_COMPOUNDS = NO
SUBGROUPING            = YES
INLINE_GROUPED_CLASSES = NO
INLINE_SIMPLE_STRUCTS  = NO
TYPEDEF_HIDES_STRUCT   = NO
LOOKUP_CACHE_SIZE      = 0

EXTRACT_ALL            = YES
EXTRACT_PRIVATE        = YES
EXTRACT_PACKAGE        = NO
EXTRACT_STATIC         = YES
EXTRACT_LOCAL_CLASSES  = YES
EXTRACT_LOCAL_METHODS  = YES
EXTRACT_ANON_NSPACES   = NO
HIDE_UNDOC_MEMBERS     = NO
HIDE_UNDOC_CLASSES     = NO
HIDE_FRIEND_COMPOUNDS  = NO
HIDE_IN_BODY_DOCS      = NO
INTERNAL_DOCS          = NO
CASE_SENSE_NAMES       = YES
HIDE_SCOPE_NAMES       = NO
SHOW_INCLUDE_FILES     = NO
SHOW_GROUPED_MEMB_INC  = NO
FORCE_LOCAL_INCLUDES   = NO
INLINE_INFO            = YES
SORT_MEMBER_DOCS       = YES
SORT_BRIEF_DOCS        = NO
SORT_MEMBERS_CTORS_1ST = NO
SORT_GROUP_NAMES       = NO
SORT_BY_SCOPE_NAME     = NO
STRICT_PROTO_MATCHING  = NO
GENERATE_TODOLIST      = YES
GENERATE_TESTLIST      = YES
GENERATE_BUGLIST       = YES
GENERATE_DEPRECATEDLIST= YES
ENABLED_SECTIONS       =
MAX_INITIALIZER_LINES  = 30
SHOW_USED_FILES        = YES
SHOW_FILES             = YES
SHOW_NAMESPACES        = YES

INPUT                  = README.md doc/DOXYGEN_MAINPAGE.md src/common src/mars
INPUT_ENCODING         = UTF-8
FILE_PATTERNS          = *.F90 *.f90 *.md
RECURSIVE              = YES
EXCLUDE                =
EXCLUDE_SYMLINKS       = NO
EXCLUDE_PATTERNS       = */.svn/* */.git/* */lib/* */bin/*
EXCLUDE_SYMBOLS        =
EXAMPLE_PATH           =
EXAMPLE_PATTERNS       = *
EXAMPLE_RECURSIVE      = NO
IMAGE_PATH             =
INPUT_FILTER           =
FILTER_PATTERNS        = *.F90=doc/fortran_doxygen_filter.py *.f90=doc/fortran_doxygen_filter.py
FILTER_SOURCE_FILES    = NO
USE_MDFILE_AS_MAINPAGE = doc/DOXYGEN_MAINPAGE.md

SOURCE_BROWSER         = YES
INLINE_SOURCES         = NO
STRIP_CODE_COMMENTS    = YES
REFERENCED_BY_RELATION = YES
REFERENCES_RELATION    = YES
REFERENCES_LINK_SOURCE = YES
SOURCE_TOOLTIPS        = YES
USE_HTAGS              = NO
VERBATIM_HEADERS       = YES

QUIET                  = YES
WARNINGS               = YES
WARN_IF_UNDOCUMENTED   = NO
WARN_IF_DOC_ERROR      = YES
WARN_NO_PARAMDOC       = NO
WARN_AS_ERROR          = NO
WARN_LOGFILE           = doc/doxygen/mars/warnings.log

GENERATE_HTML          = YES
HTML_OUTPUT            = html
HTML_FILE_EXTENSION    = .html
HTML_COLORSTYLE_HUE    = 220
HTML_COLORSTYLE_SAT    = 100
HTML_COLORSTYLE_GAMMA  = 80
HTML_DYNAMIC_MENUS     = YES
HTML_DYNAMIC_SECTIONS  = NO
HTML_INDEX_NUM_ENTRIES = 100
HTML_HEADER            = doc/theme/doxygen_header.html
HTML_EXTRA_FILES       = doc/theme/pem-favicon.png
HTML_EXTRA_STYLESHEET  = doc/theme/doxygen_theme.css

GENERATE_LATEX         = NO
GENERATE_XML           = NO
GENERATE_DOCBOOK       = NO
GENERATE_RTF           = NO
GENERATE_MAN           = NO

CLASS_DIAGRAMS         = YES
HIDE_UNDOC_RELATIONS   = YES
HAVE_DOT               = YES
DOT_NUM_THREADS        = 0
DOT_MULTI_TARGETS      = YES
GENERATE_LEGEND        = YES
DOT_CLEANUP            = YES